Synthetic Biology Network Discovery
Cells utilize networks that span both temporal and spatial organizations, encompassing many individual steps of regulation. While the regulatory regimes to build networks in synthetic biology has grown from solely transcription to also include protein or RNA modalities, circuits comprised solely of protein-protein interactions have yet to be produced. Here, I'll describe several mechanisms relying on phosphorylation-activated localization and effector actuation for building OR and NOT gates from protein-protein phosphorylation events and their subsequent composition to form fast acting networks for ultrasensitive chemical sensing and phenotypic cellular control. Design and optimization of these networks were enabled by the use of a modular assembly method for rapid construction and testing of network variants. The final protein network spanned 15 individual member species to form a toggle switch that could sense chemical inputs as low as 1.0s in duration and maintain state over cellular division events. Motivated by these synthetic network designs, I will then describe one avenue in which synthetic biology network results can elucidate natural biological networks, i.e., synthetic biology-inspired discovery.